rs339567 chr1:194873604 T>C
- Sequence
gataagagaaatcgcttgatgaca[T/C]gagccacgcctaaaaggctgaagc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- E2F1_HUMAN CEBPB_HUMAN ATF3_HUMAN MEIS2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | n/a | 4.12 | 3.00 | n/a | No Hit | |||
| CEBPB_HUMAN | 0.05 | 2.94 | 2.17 | n/a | No Hit | |||
| ATF3_HUMAN | n/a | 2.99 | 3.00 | -1.77 | Weak Discordant | |||
| MEIS2_HUMAN | -3.87 | 2.27 | 2.50 | n/a | No Hit | |||
| ATF1_HUMAN | n/a | 2.65 | 3.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), diabetic retinopathy in type 2 diabetes mellitus, infant head circumference, serum creatinine, triglycerides