rs34009007 chr5:42927871 T>C
- Sequence
aaaaaggactctacctgtcagagt[T/C]cacacaggaaccgaaaccaaagca
- ASB in cell types
- GM12878 (female B-cells) GM12891 (male B-cells)
- ASB for transcription factors
- BHE40_HUMAN IKZF2_HUMAN IKZF1_HUMAN COT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | 2.53 | n/a | 1.33 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.03 | -1.48 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | 2.00 | -1.27 | 1.33 | n/a | No Hit | |||
| COT1_HUMAN | 2.21 | -2.25 | 1.33 | n/a | No Hit | |||
| SPI1_HUMAN | 1.52 | 1.52 | 1.78 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Nerve_Tibial, Pancreas, Stomach, Testis