rs34021640 chr1:188707015 G>T
- Sequence
tgctaccagccccttagtcactta[G/T]tcatcatccaggttatcagattta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- FOS_HUMAN GATA3_HUMAN AHR_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | 0.83 | n/a | 1.50 | n/a | n/a | |||
| GATA3_HUMAN | 1.39 | -0.65 | 2.12 | n/a | No Hit | |||
| AHR_HUMAN | 1.85 | -2.63 | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.38 | n/a | 2.50 | n/a | No Hit | |||
| JUN_HUMAN | 1.32 | -0.93 | 1.88 | -2.73 | Concordant |
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Motif analysis
