rs34042490 chr17:75456875 T>C
- Sequence
tggggtctgcacccagagaacggc[T/C]taaggggatgcctcctgaggggga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) cranial neural crest cells
- ASB for transcription factors
- AP2A_HUMAN CLOCK_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | -1.97 | 2.04 | 2.00 | 2.47 | Concordant | |||
| CLOCK_HUMAN | -0.99 | 1.49 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Nerve_Tibial, Testis, Thyroid, Whole_Blood