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rs340879 chr1:213983171 T>C

Sequence
ccgcgggcgaggaagccccgctcc[T/C]gccgagtgcctggagaggagattc
ASB in cell types
HEK293 (embryonic kidney)

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
HEK293 (embryonic kidney) 0.64 0.00 6.2·10-61.00 2.03
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum Adrenal_Gland Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Colon_Transverse Heart_Atrial_Appendage Heart_Left_Ventricle Liver Pancreas Pituitary Prostate Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid

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