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rs341329 chr5:112491652 T>A

Sequence
ccaacaggaaagaaggatgagggc[T/A]ccccttaactagaccacagcatcc
ASB in cell types
VCaP (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.14 0.26 5.1·10-31.00 1.61 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial Brain_Caudate_basal_ganglia Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Lung

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