rs34212128 chr1:212242691 T>A
- Sequence
tcctcctgaaatagcacagtcaca[T/A]gaaataaaaccgtgttcggtaaag
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN SOX13_HUMAN RARA_HUMAN SMAD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 2.97 | n/a | 1.33 | n/a | No Hit | |||
| SOX13_HUMAN | 2.74 | n/a | 1.50 | n/a | n/a | |||
| RARA_HUMAN | 2.35 | -2.71 | 1.33 | n/a | No Hit | |||
| SMAD4_HUMAN | 2.38 | -2.42 | 1.33 | n/a | No Hit | |||
| SOX5_HUMAN | 2.52 | n/a | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 13
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Esophagus_Mucosa, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Testis, Thyroid