rs34277514 chr1:21964137 G>A
- Sequence
caacttcctagaaaacacctggag[G/A]caatcatggctctcgggcgcccct
- ASB in cell types
- H1 (embryonic stem cells) erythroid cells K562 (myelogenous leukemia) IMR90 (lung fibroblasts)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.53 | 1.53 | 1.61 | n/a | n/a | |||
| CTCF_HUMAN | 1.29 | 0.51 | 1.41 | -2.08 | Concordant | |||
| SMC3_HUMAN | 1.03 | -0.62 | 1.17 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
