rs34464091 chr17:35942838 T>G
- Sequence
tagggaagctaaaagcagaatcga[T/G]gggtatgcctacagctgcaagatg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- SOX6_HUMAN SMCA4_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SOX6_HUMAN | 2.80 | n/a | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.94 | -1.38 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | 1.61 | -0.44 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Small_Intestine_Terminal_Ileum, Whole_Blood