rs34651 chr5:72848178 C>T
- Sequence
ccgcggcggcagcagcagcagacg[C/T]tggcggccgggctgccaggagcag
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) monocyte-derived macrophages breast tumor tissue
- ASB for transcription factors
- JUN_HUMAN TF65_HUMAN BCL3_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.35 | -0.37 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | n/a | 2.22 | 2.50 | n/a | No Hit | |||
| BCL3_HUMAN | 1.18 | -0.59 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | n/a | 2.31 | 2.50 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
EMBL-EBI chronic obstructive pulmonary disease, height, mean platelet volume, red cell distribution width
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood