rs34717 chr19:29873739 C>T
- Sequence
cctggccaggctggtgctcagacc[C/T]ccacccagcgcccccgcgcccccg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) PC9 (lung adenocarcinoma) H54
- ASB for transcription factors
- CTCF_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.32 | 0.84 | 1.43 | 1.35 | Weak Concordant | |||
| REST_HUMAN | n/a | 2.43 | 2.00 | -2.23 | Discordant |
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Motif analysis
