rs347244 chr5:73496192 C>T
- Sequence
agcccagcaggaaagcgtgggagc[C/T]aattacccacatttgccatagaca
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) breast tumor tissue
- ASB for transcription factors
- FOXA1_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.24 | 1.12 | 1.91 | n/a | No Hit | |||
| EGR1_HUMAN | -0.67 | 1.47 | 2.25 | 0.00 | Weak Discordant |
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Motif analysis
