rs34724660 chr19:40909182 G>A
- Sequence
agagaggggagctgggtaagggag[G/A]cccctgctggtgtgagtagtagcc
- ASB in cell types
- liver GM23338 GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ZN143_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -3.38 | 2.52 | 1.72 | 0.83 | Weak Concordant | |||
| RAD21_HUMAN | n/a | 3.11 | 1.33 | n/a | n/a | |||
| ZN143_HUMAN | n/a | 1.68 | 1.00 | -0.95 | Weak Discordant |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood