rs348290 chr20:49188552 T>C
- Sequence
tcccgcctggaccgcagcggcccg[T/C]cctgagtcccggggcctgccggga
- ASB in cell types
- T47D (invasive ductal carcinoma) HeLa S3 (cervical adenocarcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- SP5_HUMAN GABPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP5_HUMAN | -1.64 | 1.92 | 1.33 | n/a | n/a | |||
| GABPA_HUMAN | 0.68 | -0.04 | 1.35 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas, Testis, Thyroid, Whole_Blood