rs34829630 chr6:24547422 T>C
- Sequence
gtcagtcgttgtggttgcaggtcc[T/C]gtgatgggcacggagtggtgctct
- ASB in cell types
- ICN12 (primary pre-B acute lymphomablastic leukemia) HEK293 (embryonic kidney) foreskin keratinocyte
- ASB for transcription factors
- PBX1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PBX1_HUMAN | 2.07 | -2.36 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 1.73 | 1.17 | 2.08 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Thyroid