rs34871155 chr4:25178969 C>T
- Sequence
tcacatgcacccagggcatgttga[C/T]gctgtctctctgaggactgctctt
- ASB in cell types
- HepG2 (hepatoblastoma) liver
- ASB for transcription factors
- FOXA2_HUMAN SMAD4_HUMAN RARA_HUMAN RXRA_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 1.11 | n/a | 1.50 | n/a | No Hit | |||
| SMAD4_HUMAN | 1.94 | -1.67 | 1.33 | n/a | No Hit | |||
| RARA_HUMAN | 1.88 | -2.35 | 1.50 | n/a | No Hit | |||
| RXRA_HUMAN | 1.63 | -1.65 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Small_Intestine_Terminal_Ileum, Thyroid