rs348941 chr5:113488469 G>C
- Sequence
cgcgcgaccgcagctggaatccgc[G/C]cggcgcgcaagctgcctgcagccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) cranial neural crest cells H1 (embryonic stem cells)
- ASB for transcription factors
- AP2A_HUMAN TEAD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | -2.21 | 2.29 | 2.00 | n/a | No Hit | |||
| TEAD4_HUMAN | 1.53 | -0.15 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid