rs34909357 chr10:118721171 T>A
- Sequence
ttaaaacacataaaaaatttcaaa[T/A]gaccgtacacaagataaccagttg
- ASB in cell types
- A549 (lung carcinoma) neutrophils B-cells
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.18 | 1.19 | 1.80 | n/a | n/a | |||
| SMC3_HUMAN | -0.06 | 1.12 | 1.91 | n/a | n/a | |||
| CTCF_HUMAN | 0.69 | 0.81 | 1.55 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood