rs34967322 chr1:222465696 A>T
- Sequence
ctgccccttccgaggctactcccc[A/T]aaatagtcccgggttgcttgggaa
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- RAD21_HUMAN NC2A_HUMAN SMC3_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -0.37 | 1.60 | 1.88 | n/a | n/a | |||
| NC2A_HUMAN | -2.70 | 2.50 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | -0.30 | 1.22 | 2.03 | n/a | n/a | |||
| CTCF_HUMAN | 0.23 | 0.91 | 1.57 | n/a | No Hit | |||
| JUN_HUMAN | -0.82 | 1.23 | 2.00 | n/a | No Hit |
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