rs350825 chr19:4140566 T>G
- Sequence
gagctaggacgcaggtccagcctc[T/G]tatccggagtcctcctcgtatccc
- ASB in cell types
- K562 (myelogenous leukemia) MM1.S (plasma cell myeloma) D54 (glioblastoma) BCBL-1 (B-cell lymphoma)
- ASB for transcription factors
- CTCF_HUMAN ETV5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.74 | 0.65 | 1.47 | n/a | No Hit | |||
| ETV5_HUMAN | -1.75 | 1.81 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, hdl cholesterol, rheumatoid arthritis, simpson-angus scale, total cholesterol