rs350880 chr19:4153403 A>G
- Sequence
gaaagaaaaaaagaaaaagtcctc[A/G]taagtagggcagaggtcacggcag
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- GATA3_HUMAN FOXK2_HUMAN PBX2_HUMAN HDAC2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA3_HUMAN | 2.54 | n/a | 1.50 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.29 | 1.36 | 1.56 | n/a | n/a | |||
| PBX2_HUMAN | n/a | 2.13 | 2.00 | n/a | No Hit | |||
| HDAC2_HUMAN | -0.76 | 1.37 | 1.78 | n/a | n/a | |||
| ZEB2_HUMAN | -1.45 | 1.50 | 2.00 | n/a | n/a |
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