rs35105711 chr20:53503849 C>T
- Sequence
ggaggaaggaaggatcaacagata[C/T]gtggaggagccaagatggccgaat
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ARI1B_HUMAN RING2_HUMAN ZBT40_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 2.63 | n/a | 2.00 | n/a | n/a | |||
| RING2_HUMAN | 2.72 | n/a | 2.00 | n/a | n/a | |||
| ZBT40_HUMAN | 2.35 | -3.49 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 1.95 | n/a | 2.00 | n/a | n/a | |||
| Z512B_HUMAN | 2.13 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Colon_Transverse, Esophagus_Mucosa, Minor_Salivary_Gland, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg