rs35155387 chr8:132478811 C>T
- Sequence
gctaagtctgaggtcctgtgtgga[C/T]gcccccacctggtggccgaaccta
- ASB in cell types
- HCT-116 (colon carcinoma) HEK293 (embryonic kidney) liver esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SCRT2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.26 | 0.99 | 1.46 | 0.26 | Weak Concordant | |||
| RAD21_HUMAN | -0.43 | 1.82 | 1.56 | n/a | n/a | |||
| SCRT2_HUMAN | -2.02 | 1.82 | 1.33 | n/a | n/a |
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Motif analysis
