rs352278 chr3:6618001 G>T
- Sequence
attttggaatatttgtttacataa[G/T]gagatatcttggggatgagactca
- ASB in cell types
- HepG2 (hepatoblastoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA2_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 2.22 | n/a | 1.33 | -0.64 | Weak Concordant | |||
| FOXA1_HUMAN | 1.23 | -1.10 | 1.39 | -1.24 | Weak Concordant |
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Motif analysis
