rs352606 chr5:107557156 G>A
- Sequence
ttatatgtcccttttgaactgtaa[G/A]ctacacagggcacagatcgtatct
- ASB in cell types
- LNCaP (prostate carcinoma) ZR-75-1 (invasive ductal carcinoma) breast tumor tissue CWR22 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.25 | 1.51 | 1.59 | n/a | No Hit | |||
| ANDR_HUMAN | -0.04 | 1.18 | 1.47 | 4.01 | Concordant | |||
| ESR1_HUMAN | 1.99 | 1.20 | 2.12 | n/a | No Hit |
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Motif analysis
