rs35312672 chr17:43315904 G>A
- Sequence
gagggtggtaatggcgaaggcaaa[G/A]atgctggattcgacaaatttttcc
- ASB in cell types
- A549 (lung carcinoma) K562 (myelogenous leukemia) GM12878 (female B-cells) CD14+ monocytes
- ASB for transcription factors
- JUN_HUMAN SMAD5_HUMAN BCL3_HUMAN PEBB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.21 | n/a | 3.00 | n/a | No Hit | |||
| SMAD5_HUMAN | 3.03 | n/a | 1.50 | n/a | n/a | |||
| BCL3_HUMAN | 2.13 | n/a | 3.00 | n/a | n/a | |||
| PEBB_HUMAN | 2.30 | -2.64 | 1.50 | n/a | No Hit | |||
| MAF_HUMAN | 2.15 | -3.19 | 2.25 | 1.36 | Weak Discordant |
Items per page:
1 – 5 of 10
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood