rs35325227 chr12:105331187 C>T
- Sequence
gagcgcggggaggactgtcgcggg[C/T]tcccctgcagccgccggggctcac
- ASB in cell types
- HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) GM12878 (female B-cells) 786-O (renal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ZBT26_HUMAN ZN398_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.65 | 1.58 | 1.50 | n/a | No Hit | |||
| ZBT26_HUMAN | n/a | 2.24 | 2.00 | n/a | n/a | |||
| ZN398_HUMAN | -1.95 | 2.18 | 2.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Prostate, Testis