rs353482 chr5:177071881 C>T
- Sequence
tctgccctgtgcaaagccctgtta[C/T]agagacagggcagacccgtccccg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) foreskin keratinocyte
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | 0.77 | -0.19 | 1.99 | |||
| A549 (lung carcinoma) | 0.68 | -0.01 | 2.00 | |||
| foreskin keratinocyte | 0.44 | n/a | 2.50 |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), hdl cholesterol, height, infant head circumference, urinary albumin-to-creatinine ratio, waist hip ratio
GTEx eQTL Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid