rs353491 chr5:177005946 C>G
- Sequence
cggcgctgcctaagcacctggaaa[C/G]gcgccggccctgcgggggcgaaat
- ASB in cell types
- K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts GM12878 (female B-cells) lymphoblastoid cells
- ASB for transcription factors
- GATA1_HUMAN ATF7_HUMAN AP2C_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 2.35 | -0.16 | 1.83 | n/a | No Hit | |||
| ATF7_HUMAN | 2.31 | -3.46 | 2.00 | n/a | n/a | |||
| AP2C_HUMAN | 1.54 | -1.40 | 1.75 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.12 | 0.37 | 1.67 | n/a | n/a | |||
| HDAC1_HUMAN | 1.61 | -0.34 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood