rs35391575 chr19:44500683 G>C
- Sequence
agggcgtcctcgtccggggcccgg[G/C]ggggcgccacacctgtgcatgtgc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) HepG2 (hepatoblastoma) foreskin keratinocyte
- ASB for transcription factors
- GABPA_HUMAN THA11_HUMAN GLIS2_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | -0.05 | 0.97 | 1.44 | n/a | No Hit | |||
| THA11_HUMAN | -1.58 | 1.36 | 1.33 | n/a | No Hit | |||
| GLIS2_HUMAN | 1.53 | -1.80 | 1.33 | n/a | n/a | |||
| ZFX_HUMAN | 0.19 | 1.93 | 1.92 | n/a | No Hit | |||
| MNT_HUMAN | 0.13 | 1.95 | 1.72 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid