rs354069 chr7:149625247 G>A
- Sequence
tacttcgaacaataggaatatacc[G/A]gtagatgctacttagcattttcta
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- LMBL2_HUMAN HDAC1_HUMAN CTCF_HUMAN PRD10_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | -1.82 | 1.57 | 1.50 | n/a | n/a | |||
| HDAC1_HUMAN | -0.14 | 1.63 | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 0.36 | 0.64 | 1.40 | 0.85 | Weak Concordant | |||
| PRD10_HUMAN | -1.44 | 1.49 | 1.75 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Prostate, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood