rs35453042 chr5:60844234 T>C
- Sequence
cgactggcagcgcgagcgcggagc[T/C]cctcacagcggcccccgctgtccc
- ASB in cell types
- HepG2 (hepatoblastoma) foreskin keratinocyte upper lobe of left lung A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SP130_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.30 | -0.00 | 1.59 | n/a | No Hit | |||
| SP130_HUMAN | 1.73 | -1.79 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Ovary, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood