rs358508 chr5:39101162 T>C
- Sequence
ggaaaagcctgtccgacagagctg[T/C]ggcctttgagtgaaggacaccgcc
- ASB in cell types
- A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) breast tumor tissue
- ASB for transcription factors
- JUN_HUMAN GCR_HUMAN CEBPB_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.49 | -0.42 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 2.30 | 0.21 | 2.14 | n/a | No Hit | |||
| CEBPB_HUMAN | 1.31 | -0.70 | 2.10 | n/a | No Hit | |||
| EP300_HUMAN | 1.77 | -2.67 | 2.30 | n/a | n/a | |||
| GRHL2_HUMAN | 0.35 | 1.65 | 2.30 | n/a | No Hit |
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