rs35887529 chr7:6374280 T>C
- Sequence
acaggttcctcttaaagccctgag[T/C]cccagggaagggacctgcaggccc
- ASB in cell types
- A549 (lung carcinoma) CD14+ monocytes CWR22 (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN JUN_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.47 | n/a | 2.50 | n/a | No Hit | |||
| ANDR_HUMAN | 0.12 | 1.50 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.59 | 1.03 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood