rs35899216 chr8:142988304 G>A
- Sequence
cggcattcttgcttcttcctgagg[G/A]gtaggccagttgtcttacacatcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor tissue
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ESR1_HUMAN ZBT40_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.45 | 0.86 | 1.65 | n/a | No Hit | |||
| RAD21_HUMAN | -1.57 | 1.52 | 1.50 | n/a | n/a | |||
| ESR1_HUMAN | 0.73 | 0.43 | 1.93 | n/a | No Hit | |||
| ZBT40_HUMAN | n/a | 1.85 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Liver, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood