rs359284 chr10:17284757 T>C
- Sequence
tctgtgtatgtgcatggtaagtcc[T/C]cctcagtatatgctatggtacaaa
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.77 | 1.51 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP cystatin c in serum, hdl cholesterol, hdl cholesterol change with statins, ldl cholesterol, total cholesterol, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Prostate, Spleen, Testis, Thyroid