rs36000545 chr17:81120022 A>G
- Sequence
ggagagccggggctccccctaagg[A/G]acgtagggggcgattccttggcgc
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP C4-2B (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- HDAC1_HUMAN CTCF_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC1_HUMAN | 1.69 | -1.21 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.10 | 0.55 | 1.66 | 2.41 | Discordant | |||
| CREB1_HUMAN | 0.95 | 0.88 | 1.67 | n/a | No Hit |
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Motif analysis
