rs360102 chr1:225880162 G>A
- Sequence
tagcaaatactatcagcctgagac[G/A]gaggtaaggtcaggtggccagtcc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- ARI1B_HUMAN MTG8R_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | n/a | 2.59 | 2.50 | n/a | n/a | |||
| MTG8R_HUMAN | n/a | 2.25 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, cystatin c in serum, late onset alzheimers disease, ldl cholesterol, spine bone mineral density (bmd), stabilized warfarin dose, tetrology of fallot, triglycerides
GTEx eQTL Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis