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rs360103 chr1:225881227 G>A

Sequence
ttatgtgagcaggctctggagtta[G/A]ggtctcagcaccacgcagttcaga
ASB in cell types
K562 (myelogenous leukemia) HEK293 (embryonic kidney)
ASB for transcription factors
HDAC1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HDAC1_HUMAN -3.47 1.73 1.000.02 2.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP birth weight rheumatoid arthritis
GTEx eQTL Artery_Aorta Brain_Caudate_basal_ganglia Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Putamen_basal_ganglia Brain_Spinal_cord_cervical_c-1 Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Mucosa Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Pancreas Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Stomach Testis

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