ADASTRA v1.6.10
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rs360103
chr1:225881227
G
>
A
Sequence
ttatgtgagcaggctctggagtta[G/A]ggtctcagcaccacgcagttcaga
ASB in cell types
K562 (myelogenous leukemia)
HEK293 (embryonic kidney)
ASB for transcription factors
HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HDAC1_HUMAN
-3.47
1.73
1.00
0.02
2.50
n/a
n/a
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
birth weight
,
rheumatoid arthritis
GTEx eQTL
Artery_Aorta
,
Brain_Caudate_basal_ganglia
,
Brain_Frontal_Cortex_BA9
,
Brain_Hippocampus
,
Brain_Putamen_basal_ganglia
,
Brain_Spinal_cord_cervical_c-1
,
Cells_Cultured_fibroblasts
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Liver
,
Lung
,
Minor_Salivary_Gland
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Stomach
,
Testis
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)