rs36108279 chr16:31859586 G>A
- Sequence
ggtctagcggtaacgccagtacct[G/A]agaaagcacctgttacttagcaga
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) foreskin keratinocyte hepatocytes
- ASB for transcription factors
- RAD21_HUMAN KAISO_HUMAN SCRT1_HUMAN SCRT2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.01 | 0.40 | 1.42 | n/a | n/a | |||
| KAISO_HUMAN | -3.65 | 2.43 | 2.00 | n/a | No Hit | |||
| SCRT1_HUMAN | 1.86 | -0.79 | 1.17 | n/a | n/a | |||
| SCRT2_HUMAN | 0.61 | n/a | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Nerve_Tibial, Prostate, Skin_Sun_Exposed_Lower_leg, Thyroid