rs36168299 chr17:82497278 T>C
- Sequence
cacgtgggaggtcacgtgggtggt[T/C]tgtcaactgctcgcagacgccttc
- ASB in cell types
- HEK293 (embryonic kidney) SK-N-SH (neuroblastoma) H1 (embryonic stem cells) LNCaP (prostate carcinoma)
- ASB for transcription factors
- USF1_HUMAN GLIS1_HUMAN CTCF_HUMAN SCRT2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 2.15 | -0.56 | 1.80 | n/a | No Hit | |||
| GLIS1_HUMAN | 2.54 | n/a | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.93 | 0.17 | 1.25 | n/a | No Hit | |||
| SCRT2_HUMAN | 2.63 | -3.29 | 1.33 | n/a | n/a | |||
| FOXA1_HUMAN | 1.40 | -1.10 | 1.67 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood