ADASTRA v1.6.10
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Soos
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rs366066
chr11:72573525
T
>
C
Sequence
tggggaggtgaggacagcgagggc[T/C]ggacaccacctggtggccctgagc
ASB in cell types
A549 (lung carcinoma)
epidermal keratinocytes
786-O (renal carcinoma)
upper lobe of left lung
ASB for transcription factors
RAD21_HUMAN
SMC3_HUMAN
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Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN
-0.29
1.27
0.94
4.3·10
-6
1.81
n/a
n/a
SMC3_HUMAN
-0.02
1.50
1.00
6.7·10
-6
1.99
n/a
n/a
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Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol change with statins
,
irritible bowel syndrome
,
schizophrenia
,
total cholesterol
GTEx eQTL
Adipose_Subcutaneous
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)