rs366131 chr5:14011937 T>C
- Sequence
catgctcggggccggctccggttc[T/C]ggggaagcccagagcttccggcct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF-7 C4-12 (invasive breast ductal carcinoma)
- ASB for transcription factors
- RFX1_HUMAN ELF1_HUMAN BMI1_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | -0.52 | 0.62 | 2.44 | 2.81 | Concordant | |||
| ELF1_HUMAN | -0.36 | 2.56 | 1.92 | n/a | No Hit | |||
| BMI1_HUMAN | 0.19 | 2.47 | 1.67 | n/a | n/a | |||
| ZFX_HUMAN | 0.26 | 2.44 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid