rs366327 chr4:87058878 A>T
- Sequence
ccactgcctctgccggcaggagcc[A/T]ctagtggactgtattggatgaatt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMCA4_HUMAN REST_HUMAN ZNF24_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.26 | 0.94 | 1.85 | -3.69 | Discordant | |||
| SMCA4_HUMAN | -1.66 | 2.24 | 2.00 | n/a | n/a | |||
| REST_HUMAN | n/a | 2.61 | 2.00 | n/a | No Hit | |||
| ZNF24_HUMAN | -0.56 | 1.67 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -0.52 | 1.82 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Muscularis, Muscle_Skeletal, Thyroid