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rs366576 chr16:89574773 C>A

Sequence
ccgccctgcagccgcgcccggcgc[C/A]atcccgccgtccgaccgcgagggg
ASB in cell types
786-O (renal carcinoma) GM12878 (female B-cells)
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.21 1.39 1.004.6·10-9 1.33 -3.93 Discordant
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Motif analysis

CTCF_HUMAN Discordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adrenal_Gland Cells_Cultured_fibroblasts Esophagus_Muscularis Lung Muscle_Skeletal Pancreas Skin_Sun_Exposed_Lower_leg Spleen Stomach

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