rs366576 chr16:89574773 C>A
- Sequence
ccgccctgcagccgcgcccggcgc[C/A]atcccgccgtccgaccgcgagggg
- ASB in cell types
- 786-O (renal carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.21 | 1.39 | 1.33 | -3.93 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach