rs367996 chr19:11293797 A>G
- Sequence
agttccgtgggtgtgtgatgtagg[A/G]atctggggcacgggaagttattct
- ASB in cell types
- macrophages GM12878 (female B-cells)
- ASB for transcription factors
- CEBPB_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.57 | -0.05 | 2.38 | n/a | No Hit | |||
| STAT1_HUMAN | -0.21 | 1.88 | 2.20 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, ldl cholesterol, primary rhegmatogenous retinal detachment, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Colon_Sigmoid, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood