rs368047 chr16:84475762 C>G
- Sequence
cctgccaacaggtttgctggaggc[C/G]atcactccctgtcaccaaggttat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN AP2C_HUMAN CTBP1_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.39 | 1.29 | 2.64 | n/a | No Hit | |||
| AP2C_HUMAN | -1.13 | 2.39 | 2.25 | n/a | No Hit | |||
| CTBP1_HUMAN | -2.29 | 2.07 | 1.50 | n/a | n/a | |||
| FOXA1_HUMAN | -1.43 | 1.42 | 2.83 | n/a | No Hit | |||
| GATA3_HUMAN | -0.05 | 0.89 | 2.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis