rs368186 chr17:58659298 A>G
- Sequence
ccaacagcgtctctcccccgccac[A/G]aagacattatttacttaatattgc
- ASB in cell types
- A549 (lung carcinoma) K562 (myelogenous leukemia) GM12878 (female B-cells) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- JUN_HUMAN FOXK2_HUMAN BCL3_HUMAN HTF4_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.47 | n/a | 3.00 | n/a | No Hit | |||
| FOXK2_HUMAN | n/a | 2.86 | 1.33 | n/a | n/a | |||
| BCL3_HUMAN | 2.30 | n/a | 3.00 | n/a | n/a | |||
| HTF4_HUMAN | 1.54 | 2.92 | 2.33 | n/a | No Hit | |||
| DNM3B_HUMAN | -3.00 | 2.15 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood