rs368243 chr17:58631618 T>C
- Sequence
tgaggaaaccaactactattaaca[T/C]ctgaaaaaaaaaaaaacccagaac
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) K562 (myelogenous leukemia) 786-O (renal carcinoma)
- ASB for transcription factors
- JUN_HUMAN FOXK2_HUMAN CTCF_HUMAN HTF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.83 | -0.09 | 3.00 | n/a | No Hit | |||
| FOXK2_HUMAN | -2.83 | 2.51 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.33 | 0.79 | 1.57 | n/a | No Hit | |||
| HTF4_HUMAN | 1.18 | 2.92 | 2.00 | n/a | No Hit | |||
| BCL3_HUMAN | 2.01 | -2.66 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP childhood dental caries, chronic kidney disease, college completion, serum creatinine, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood