rs368817 chr13:110525717 G>A
- Sequence
agcagggagggccgagccgagcac[G/A]cctgctggtatgtcctcccagcct
- ASB in cell types
- keratinocytes ICN12 (primary pre-B acute lymphomablastic leukemia) GM12878 (female B-cells) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- SNAI2_HUMAN HTF4_HUMAN PBX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.08 | n/a | 1.50 | 4.61 | Discordant | |||
| HTF4_HUMAN | 0.01 | 1.56 | 1.33 | 7.86 | Concordant | |||
| PBX1_HUMAN | -2.59 | 2.00 | 1.50 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
